Principal Investigator

Prof. Shu-Yun Chen

鄭舒允

Shu-Yun Chen

Shu-Yun Chen 鄭舒允
副教授 · 農藝學系 Associate Professor · Dept. of Agronomy

專研功能性基因體學與精準育種,整合 GWAS、RNA-seq、BSA-seq 解析農園藝作物抗病機制,致力開發分子標記加速育種流程。

Research focuses on functional genomics and precision breeding, integrating GWAS, RNA-seq, and BSA-seq to uncover disease-resistance mechanisms and develop molecular markers for accelerated breeding in agricultural and horticultural crops.

Current Members

博士班學生

Ph.D. Students

李崇瑋
李崇瑋
Chong-Wei Lee
博士生 Ph.D. Student

研究主題:
甘藷基因體
多倍體作物基因體
全基因體關聯分析
高通量表型分析
ddRAD-seq 與次世代定序

Research Topic:
Sweet Potato Genetics
Polyploid Crop Genomics
GWAS
High-Throughput Phenotyping
ddRAD-seq & NGS Genotyping

朱哲翰
朱哲翰
Che-Han Chu
博士生 Ph.D. Student

研究主題:
絲瓜基因體
抗病育種
抗病基因探勘
次世代定序與轉錄體分析
高通量表型分析

Research Topic:
Luffa Genomics
Disease Resistance Breeding
Mining of Disease Resistance Genes
Next-Generation Sequencing and Transcriptomic Analysis
High-Throughput Phenotyping

Current Members

碩士班學生

M.S. Students

陳柏儒
陳柏儒
Po-Ru Chen
碩士生 M.S. Student

研究主題:
甘藷基因體
多倍體作物基因體
氮肥利用效率
土壤與植物碳氮含量分析
ddRAD-seq 與次世代定序

Research Topic:
Sweet Potato Genetics
Polyploid Crop Genomics
Nitrogen Use efficiency
Soil & Plant Carbon-Nitrogen Allocation Analysis
ddRAD-seq & NGS Genotyping

+
招募中
Recruiting
碩士生 M.S. Student

歡迎對基因體學與育種有興趣的同學加入!

We welcome students interested in genomics & breeding!

🌱 大學部專題生

🌱 Undergraduate Researchers

趙芝瑩
趙芝瑩
Chih-Ying Chao
大學部 Undergraduate

專題研究:絲瓜抗萎凋病防禦機制的跨層級驗證

Project: Cross-Level Validation of Defense Mechanisms Against Fusarium Wilt in Luffa

盧昱婷
盧昱婷
Yu-Ting Lu (Ashli)
大學部 Undergraduate

專題研究:高濕度條件誘導番茄花脫落相關花粉發育調控基因之分子特性研究

Project: Molecular Characterization of Pollen-Development Regulatory Genes Associated with Flower Abscission under High-Humidity Conditions in Tomato

謝佳均
謝佳均
Chia-Chun Hsieh
大學部 Undergraduate

專題研究:研究主題規劃中

Project: Research topic under development

+
招募中
Recruiting
大學部 Undergraduate

歡迎加入實驗室!

Join our lab!

國際訪問學生

International Visiting Students

Laura Vester
Laura Vester
國際訪問學生 Visiting Student

國家:愛沙尼亞
原屬學校:Estonian University of Life Sciences

Country: Estonia
Home institution: Estonian University of Life Sciences

NH
Nurul Hikma
國際訪問學生 Visiting Student

國家:印尼
計畫:Taiwan Experience Education Program (TEEP)
原屬學校:IPB University

Country: Indonesia
Program: Taiwan Experience Education Program (TEEP)
Home institution: IPB University

AW
Asiyah Wardah
國際訪問學生 Visiting Student

國家:印尼
計畫:Taiwan Experience Education Program (TEEP)
原屬學校:IPB University

Country: Indonesia
Program: Taiwan Experience Education Program (TEEP)
Home institution: IPB University

PP
Palpa Paudel
國際訪問學生 Visiting Student

國家:尼泊爾
計畫:Taiwan Experience Education Program (TEEP)

Country: Nepal
Program: Taiwan Experience Education Program (TEEP)

🏅 實驗室歷屆成員

🏅 Lab Alumni

李崇瑋
李崇瑋
Chong-Wei Lee
碩士畢業 M.S. 2026 M.S. 2026

論文題目:基於 ddRAD-seq 與 DArT-seq 之 SNP 標誌於不同栽培環境下甘藷葉片性狀 GWAS 結果之比較分析

Thesis: Comparative Analysis of GWAS Results for Sweet Potato Leaf Traits under Different Environments Using SNP Markers from ddRAD-seq and DArT-seq

現職:國立中興大學農藝學系博士生

Current position: Ph.D. Student, Department of Agronomy, National Chung Hsing University

劉郁琪
劉郁琪
Yu-Chi Liu
碩士畢業 M.S. 2025 M.S. 2025

論文題目:絲瓜種子性狀、植株接種絲瓜專化型鐮孢菌 Fomh16 後性狀及萎凋病之單株全基因體關聯分析

Thesis: Single-Plant Genome-Wide Association Study of Seed Traits, Post-Fusarium oxysporum Forma Fomh16 Inoculation Phenotypes, and Fusarium Wilt Resistance in Luffa

現職:瑞成種苗有限公司研發經理

Current position: R&D Manager, Ruei-Cheng Seedling Co., Ltd.

魏琪蓁
魏琪蓁
Chi-Chen Wei
碩士畢業 M.S. 2025 M.S. 2025

論文題目:結合電腦影像分析與 GWAS 解析影響苦瓜高經濟價值性狀的關鍵基因

Thesis: Unveiling Key Genes Underlying High-Market-Value Traits in Bitter Gourd through Integrated Computer Vision and GWAS Approaches

現職:研究助理

Current position: Research Assistant

TW
王姿丰
Tzu-Feng Wang
碩士畢業 M.S. 2025 M.S. 2025

論文題目:黑柿番茄種子高光譜發芽率預測模型

Thesis: Hyperspectral Germination Rate Prediction Model for Green Shoulder Tomato Seeds

陳令瑜
陳令瑜
Ling-Yu Chen(Lumi)
碩士畢業 M.S. 2025 M.S. 2025

論文題目:基因型數據集篩選對蝴蝶蘭黃葉病抗性之全基因體關聯分析結果之影響

Thesis: The Impact of Genotype Dataset Selection on Analytical Outcomes of GWAS of Yellow Leaf Disease Resistance in Phalaenopsis

現職:美國維吉尼亞理工大學 生物系統工程系 博士生

Current position: Ph.D. Student, Dept. of Biological Systems Engineering, Virginia Tech

朱暢音
朱暢音
Chang-Yin Chu
碩士畢業 M.S. 2025 M.S. 2025

論文題目:以 GWAS 方式探勘繡球花生長及花朵相關性狀之分子標誌

Thesis: Identification of molecular markers associated with growth and floral traits in hydrangea through GWAS analysis

現職:中興大學園藝系凃宏明老師研究室 研究助理

Current position: Research Assistant Prof. Hung-Ming Tu’s Laboratory, Department of Horticulture, National Chung Hsing University

江渝萱
江渝萱
Yu-Xuan Jiang
碩士畢業 M.S. 2025 M.S. 2025

論文題目:透過轉錄體分析鑑定抗性絲瓜感染不同專化型鐮孢菌FOLUST與Fomh16後之極早期與早期反應相關基因

Thesis: :Identification of Immediate and Early Response Related Genes in Luffa after Inoculated with Different Fusarium oxysporum Forma FOLUST and Fomh16 through Transcriptome Analysis

現職:品管部專員,稼穡種子有限公司

Current position: Quality Control Specialist, Suntech Seed Co., Ltd.

李昀達
李昀達
Yun-Da Li
碩士畢業 M.S. 2023 M.S. 2023

論文題目:以 GWAS 方式探勘絲瓜不同種質個體族群內抗 Fusarium oxysporum 之數量基因座

Thesis: Genome-Wide Association Study of Quantitative Trait Loci for Fusarium oxysporum Resistance in Diverse Luffa Germplasm Individuals

謝承育
謝承育
Cheng-Yu Hsieh
碩士畢業 M.S. 2023 M.S. 2023

論文題目:蝴蝶蘭的InDel探勘與分析

Thesis: nDel Identification and Analysis of Orcid Phalaenopsis

現職:農業部動植物防疫檢疫署桃園分署 植物健康科 聘用技術師

Current position: Contract Technical Specialist, Plant Health Section, Taoyuan Branch, Animal and Plant Health Inspection Agency, Ministry of Agriculture